Hey, i've found something that might be useful
1.) Industrial craft textures changing sides is do to Multiverse and chunk unloading and having multiple worlds. Tested and soon as i removed multiverse and world its been fine.
2.) IF Shift + R Click to remove Redstone Energy Cell does not work update to MCPC-Plus-1.4.7-R0.2-SNAPSHOT-79.jar http://build.technicpack.net/job/MCPC-Plus/
3.) Quarries are messed up after server restart, as stated above. Fixed with the newest SNAPSHOT like above.
Server: 0.5.5
MCPC: MCPC-Plus-1.4.7-R0.2-SNAPSHOT-79
Plugins:
Craftbook
Essentials
Essentials GM
Lift
Lockette
Mobspawnereggchanger
Showcasestandalone
Streelights
Vault
Worldedit
Worldguard
Capt-O