Item crafting doesn't work (not the same reload problem)

[Peakaylopolis]

Title: Item crafting doesn't work (not the same reload problem)

Version: 3.1.2

OS: Windows Server 2008

Java Version: Java 7 64bit

Description of Problem:

I've read through the problems saying that if you /reload it then it'll break, or if you use certain plugins (permbukkit) it doesn't work as well. The crafting doesn't work from server startup, on full vanilla.

Error Messages:

None

Error Log:

None