So I modified the start.command :
#!/bin/bash
cd "$(dirname "$0")"
while true
do
java -Xmx4G -Xms4G -jar BTeam.jar nogui
echo "If you want to completely stop the server process now, press Ctrl+C before
the time is up!"
echo "Rebooting in:"
for i in 5 4 3 2 1
do
echo "$i..."
sleep 1
done
echo "Rebooting now!"
done
This will allow the server to automatically restart if shutdown from a crash occurs. I also have a simple plugin that will restart th server every 24 hours. I'll mark this as resolved.