Is there a specific reason why you didn't update Extra Utils, is it because RWTema has made it so MFR harvesters can harvest ender lilies now? I have auto-spawners set up so it's not a big deal but it would have been fun nonetheless.
Other than that it's looking good, my friend's server on 1.2.9 is running great, no more mem leak.
Can't wait to try out 1.2.9d on his server.